cool, 3-D printing does leave the better the mottled finish, but the original Atari cases a little like that anyway. I think 3-D printing with a quality printer might look pretty good. Though of course, it comes down to the final cost per case.
The good thing about 3-D printing is that the files can be altered reasonably easily. So in the case of the motherboard remake, connectors could be placed more conveniently on the motherboard and the case could be recreated to suit.
This would mean the floppy drive bezel could be made square to fit the MPF 920 floppy drives for example, actually just like the cutout on the Falcon is. Also later in the future the Jaguar joystick ports like on the STE could be added to the new motherboard. It is also possible in the future LAN could be added as a rear connector on the motherboard and case. Realistically in order to do all such changes 3-D printing is the only suitable option, at least in terms of moving forward with design and specifications with the hardware.
One guy did actually suggest making the rear of the case modular. Kind of similar to the back of PCs, we can change the backplate to suit various motherboards and connectors. Idea being the rear of the Atari case would be its own backplate which could be interchangeable. This would mean the cases overall would not really need to be changed, only the backplate. And of course printing the backplate is a lot cheaper to produce and stock.
Of course these are just ideas at the moment, but these are very plausible ideas.