Regarding the resets I'm starting to doubt it's HW. It's always when some file access happens and it's always an immediate reset - and it happens in all three modes. Never bombs or more random behaviour. I re-use the same HDDriver 10.10 and Unicorn+Bigdos combo as I have on other computers and maybe there's an incompatibility with TOS 1.04 that I don't see on other computers (that mostly run 2.06).
Regarding the flakey Shifter output in 64MHz pixel clock (1280*400 mono) - it's not just having to use a heatsink on the Shifter. As we learnt way back when overclocking PCs it's also about the voltage

Since I have the SR98 PSU in this machine I can easily change the output with the pot:
- 5.08V a bit flakey
- 5.12V (with floppy motor running) very little
-- floppy motor off almost nothing (5.13V)
- 5.16V with floppy motor on, nothing
(nothing = rock solid picture, no glitches)
Again all of this is with the one Shifter IC I've used so far so we cannot assume this holds for everyone. Also, it's of course only in this specific mode (1280*400) - but it's a really nice video mode so good to get stable
Also, the software fix for shifted bitplanes/wraparound etc is getting better. It mostly fixes everything by just putting it in AUTO, but if it doesn't it can just be launched one or more times from desktop manually until the image is good.
Also, I've inverted the MMUCLK in the Shifter expression for "Stefan-mode" in the GAL. This sort-of moves the other clocks falling edge to Shifter rise, like in the other modes. It seems to have lessened Shifter bitplane errors, at least it hasn't gotten worse.
Still to do: Solve the bootup issues. Sometimes I need to power cycle ten times to boot. Also, there's a "wakeup" in the boosted modes where floppy access results in empty disk - stable over resets. I believe this to be a specific CPU/GLUE wakeup and so should be fixed if I can get some sort of RESET-init state to work.
edit: GAL code now under source control at Github:
https://github.com/troed/DoubleST